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DiProGB - The Dinucleotide Properties Genome Browser

 

DiProGB - The Dinucleotide Properties Genome Browser

Kurzbeschreibung

DiProGB is an unconventional genome browser encoding the genome sequence by physico-chemical dinucleotide properties such as stacking energy, melting temperature or twist angle. Analyses can be performed for the + and –, as well as for the double strand. DiProGB is closely linked to the dinucleotide property database DiProDB (http://diprodb.fli-leibniz.de). Combining the conventional letter-based approach with the analysis of physico-chemical properties provides a new quality of genome analysis leading to new insights into genome functioning. What can be done with DiProGB? - Visualization of nucleotide sequences as dinucleotide-encoded sequence graphs and real-time manipulation of these graphs. - Easy localization of annotated features (e.g. genes, tRNAs, CDS ...). - Identification of patterns of specific physical properties in DNA or RNA. - Search for sequence motifs. - Search for repeats. - Statistical analyses. - And more ...

Detailinformationen (Internetadresse)

http://diprogb.fli-leibniz.de/

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